OsK25v5_G0023

Network Details
Network Name OsK25v1.0_G0023
Internal ID 221
Organism Oryza sativa (Rice)
Network Type co-expression
Network Stats
Number of Modules 302
Number of Nodes 800
Number of Edges 32,787
Average Degree 81.97
Module Explorer
Select a module from the list below to view its details. The number in parentheses is the number of nodes in the module.
Choose the module to view.
  • Module
    View
  • Genome
    View
  • Edges
     
  • Nodes
     
  • Functional
    Enrichment
  • Genetic
    Features
  • Filter By
    Trait
  • Potential
    Bio Markers
Network Viewer
The viewer is interactive. You can drag-and-drop nodes and zoom in and out using the navigation tool on the bottom right. Click a node for more details. Note: Large modules may take a while to display.

Visualized Using
Cytoscape Web
Legend
  • Red Nodes: When filtering the module by trait, the nodes adjacent to or contained by genetic features
  • Blue Edges: Inversely correlated relationship.
Genome View
The network visualized using a circular genome plot. When filtering the module by trait, the edges connecting nodes adjacent to or contained by genetic features are colored red.

When traits are selected, red edges are those where at least one node in the edge is contained within (QTL) or adjacent to (SNP) a genetic feature associated with the selected trait.

Network Edges
The following edges exist in this module. When filtering the module by trait, this report will change to indicate which edges overlap with the genetic features selected.

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Module Nodes
The following nodes exist in this module. Annotations assigned to each node are listed. This list does not change as traits are filtered.

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Function
The following terms are enriched, or over-represented in comparison to the genome backgroud, within the selected module. The p-values associated with these terms were calculated in a prior analysis. Therefore, this report does not change as the module is filtered for traits.

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Overlap with Genetic Features
Genes in this module are 'contained by' (e.g. QTL) or 'adjacent to' (e.g. SNP) the following genetic features. This report will change automatically when the trait filters are changed.

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Filter By Trait
The following form allows you to adjust this report by selected values in the form below. Please note, that updates to the reports may be slow for large modules.
Select Traits
Select a trait or map to filter the report below. Additionally, the traits for the selected maps will be drawn on the genome view (click "Genome View" tab above). You may select multiple traits or maps.
Select a genetic feature type.
Select traits to filter results.
Select maps to filter results
By default a trait is shown in the report if a node in an edge overlaps with at least one genetic feature. Change this number to require that an edge overlap with more than just one feature.

Potential Markers
Use this form to generate potential biomarkers for the nodes in this module. If you have entered a trait filter then only those nodes that overlap the filter will be used for finding nearby biomarkers. If no filter is provided then all nodes will be used.
Please provide the flanking region in base pairs around genes. Potential markers within this flanking region of genes within the module will be listed below. For example, enter 100 to include a marker that is 100bp up or downstream of any gene in the module. Enter 0 to only include markers that lie between the start and stop positions of genes.

Resources

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